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[tool.ruff.isort] is deprecated, the official supported header is [tool.ruff.lint.isort]. You should see the deprecation warning when you run ruff check:

warning: The top-level linter settings are deprecated in favour of their counterparts 
in the `lint` section. Please update the following options in `pyproject.toml`:
  - 'isort' -> 'lint.isort'

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Answer selected by CatBraaain
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